The investigation led to a readjustment of how the figures were compiled at the beginning of July.

On Thursday night, experts warned that the miscalculation was particularly concerning because the number had been used to reflect the current state of the epidemic.

Professor Carl Heneghan, the director of the Centre for Evidence-Based Medicine at the University of Oxford, said: “The  admissions data is a crucial point. I’d say it is more important than the death data because it is the best marker of the impact of the disease.”

The issue came to light on June 18, when Sage minutes record that Government scientists registered concern that non-Covid patients were being included in the outbreak data.

Public Health England, the NHS Medical Director and Prof Medley were asked to convene a group to find the “ground truth”. Prof Medley said: “With any epidemic of a new disease, there is always a period during which the clinical manifestation of the disease is being developed. 

“The initial aim is to be as complete as possible, even though there will be overestimation.

“So, we saw with the death statistics, that initially a ‘Covid death’ was defined as any death in which the person had previously tested positive.

“The same is true, but even more so, for hospital admissions. In order to capture all the potential manifestations of the disease at the start of the epidemic, all admissions of people who had tested positive were counted as ‘Covid-related admissions’.”

From July 1, the NHS began counting virus admissions as those who tested positive within a short period of entering hospital, and NHS England said there had not been a significant difference in the admissions trend line since the change. However, it is unclear how many people were misclassified as Covid-19 patients before July 1.

The over-count may have included patients admitted with an unrelated ailment but who tested positive for coronavirus on arrival, or who had previously been diagnosed with the virus. It may also include patients who were tested while already in hospital for a different condition.

Experts said knowing the correct admissions figures was crucial, not only for determining how many people are really being hospitalised with the virus but also for working out death rates.

Prof Heneghan added: “If admissions are going up, then that should drive the lockdown. But currently you have people with active infections, those who have tested positive but have been discharged, and those who have contracted it in hospital, so it isn’t helpful.

“This really does need sorting out as we go into the winter, otherwise we get into this noisy position where we can’t understand what’s going on. There will be loads of people coming in with different conditions who have survived this, so it’s a huge problem. It’s clouding our judgment as to whether the disease is having a significant impact.”

There are also wide discrepancies between NHS England admissions data and that reported daily by the Government. 

For example, on April 8, around the peak of the virus, NHS data suggests there were 480 admissions with Covid-19 and a further 2,264 people diagnosed with the virus in hospital – a total of 2,758. However the Government’s figures suggest there were 2,340 overall admissions.

For March, NHS England recorded 15,810 admissions, while the Government recorded more than 20,000. Even as recently as August 9, the NHS  recorded 33 admissions with Covid-19 and a further 40 diagnosis in hospital – a total of 73. Yet Government figures record 50 patients overall.

It is also still unclear how many people included in current admissions data are asymptomatic and were tested when in hospital for a different condition, or who had caught the disease once they were in hospital.

Prof Heneghan said it was possible that in hotspot areas, such as Oldham (see video below), there was now nobody in hospital with an active infection, but it was impossible to tell from the way the data was being recorded.

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